Stem-loop tca-mir-10

Accession

MI0008899

Description

Tribolium castaneum tca-mir-10 precursor miRNA

Gene family

MIPF0000033; mir-10

Literature search

3 open access papers mention tca-mir-10
(4 sentences)

Sequence

cucuacaucUACCCUGUAGAUCCGAAUUUGUuugaaaucaggcgaCAAAUUCGGUUCUAGAGAGGUUUgug
.....(((..(((((.((((.(((((((((((((....))...))))))))))).)))).)).)))..)))

Structure

cucua   cU   -  G    U           ---  a 
     cau  ACC CU UAGA CCGAAUUUGUu   ug a
     |||  ||| || |||| |||||||||||   ||  
     gug  UGG GA AUCU GGCUUAAACag   ac a
-----   UU   A  G    U           cgg  u 

Annotation confidence Not enough data

Genome context

ChLG2: 8102694-8102764 [+]

Mature tca-miR-10-5p

• Accession: MIMAT0008357
• Description: Tribolium castaneum tca-miR-10-5p mature miRNA
• Sequence: 10 - UACCCUGUAGAUCCGAAUUUGU - 31
• Evidence: experimental ; SOLID [3]

Mature tca-miR-10-3p

• Accession: MIMAT0019101
• Description: Tribolium castaneum tca-miR-10-3p mature miRNA
• Sequence: 46 - CAAAUUCGGUUCUAGAGAGGUUU - 68
• Evidence: experimental ; SOLID [3]

References

1. PubMed ID: 18651924
   In silico prediction and characterization of microRNAs from red flour beetle (Tribolium castaneum)
   "Singh J, Nagaraju J"
   "Insect Mol Biol (2008) 17:427-436


2. PubMed ID: 18392875
   Analysis of the Tribolium homeotic complex: insights into mechanisms constraining insect Hox clusters
   "Shippy TD, Ronshaugen M, Cande J, He J, Beeman RW, Levine M, Brown SJ, Denell RE"
   "Dev Genes Evol (2008) 218:127-139


3. PubMed ID: 20817720
   Functional shifts in insect microRNA evolution
   "Marco A, Hui JH, Ronshaugen M, Griffiths-Jones S"
   "Genome Biol Evol (2010) 2:686-696