Stem-loop hsv1-mir-H2

Accession

MI0008937

Description

Herpes Simplex Virus 1 hsv1-mir-H2 precursor miRNA

Sequence

gccaccgUCGCACGCGCCCGGCACAGACUcuguucuugguucgcggCCUGAGCCAGGGACGAGUGCGACUggggc
(((.(((((((((.((((((((.(((...((((.........)))).))).))).))).)).))))))).)))))

Structure

   a  -       G  -   -   A   ACU    ucu 
gcc cc gUCGCAC CG CCC GGC CAG   cugu   u
||| || ||||||| || ||| ||| |||   ||||   g
cgg gg CAGCGUG GC GGG CCG GUC   ggcg   g
   -  U       A  A   A   A   --C    cuu 

Annotation confidence Not enough data

Genome context

Unknown

Mature hsv1-miR-H2-5p

• Accession: MIMAT0008398
• Description: Herpes Simplex Virus 1 hsv1-miR-H2-5p mature miRNA
• Sequence: 8 - UCGCACGCGCCCGGCACAGACU - 29
• Evidence: experimental ; 454 [1], qRT-PCR [1], Illumina [2-3]

Mature hsv1-miR-H2-3p

• Accession: MIMAT0008399
• Description: Herpes Simplex Virus 1 hsv1-miR-H2-3p mature miRNA
• Sequence: 47 - CCUGAGCCAGGGACGAGUGCGACU - 70
• Evidence: experimental ; 454 [1], qRT-PCR [1], Illumina [2-3]

References

1. PubMed ID: 20181707
   Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
   "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
   "J Virol (2010) 84:4659-4672


2. PubMed ID: 18596690
   MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs
   "Umbach JL, Kramer MF, Jurak I, Karnowski HW, Coen DM, Cullen BR"
   "Nature (2008) 454:780-783


3. PubMed ID: 19656888
   Analysis of human alphaherpesvirus microRNA expression in latently infected human trigeminal ganglia
   "Umbach JL, Nagel MA, Cohrs RJ, Gilden DH, Cullen BR"
   "J Virol (2009) 83:10677-10683