Stem-loop hsv1-mir-H6

Accession

MI0008941

Description

Herpes Simplex Virus 1 hsv1-mir-H6 precursor miRNA

Sequence

cggggggccggagGGUGGAAGGCAGGGGGGUGUAggauggguaucaggacuucCACUUCCCGUCCUUCCAUCCCccguuccccucg
(((((((.(((.((((((((((..((((((((.((..((.....))...))..))))))))..)))))))))).)))..)))))))

Structure

       -c   a          CA        -U  -ga  g 
cgggggg  cgg gGGUGGAAGG  GGGGGGUG  Ag   ug g
|||||||  ||| ||||||||||  ||||||||  ||   || u
gcucccc  gcc CCUACCUUCC  CCCUUCAC  uc   ac a
       uu   C          UG        cu  agg  u 

Annotation confidence Not enough data

Genome context

Unknown

Mature hsv1-miR-H6-5p

• Accession: MIMAT0015281
• Description: Herpes Simplex Virus 1 hsv1-miR-H6-5p mature miRNA
• Sequence: 14 - GGUGGAAGGCAGGGGGGUGUA - 34
• Evidence: experimental ; Illumina [3]

Mature hsv1-miR-H6-3p

• Accession: MIMAT0008404
• Description: Herpes Simplex Virus 1 hsv1-miR-H6-3p mature miRNA
• Sequence: 54 - CACUUCCCGUCCUUCCAUCCC - 74
• Evidence: experimental ; 454 [1], qRT-PCR [1], Illumina [2-3]

References

1. PubMed ID: 20181707
   Numerous conserved and divergent microRNAs expressed by herpes simplex viruses 1 and 2
   "Jurak I, Kramer MF, Mellor JC, van Lint AL, Roth FP, Knipe DM, Coen DM"
   "J Virol (2010) 84:4659-4672


2. PubMed ID: 18596690
   MicroRNAs expressed by herpes simplex virus 1 during latent infection regulate viral mRNAs
   "Umbach JL, Kramer MF, Jurak I, Karnowski HW, Coen DM, Cullen BR"
   "Nature (2008) 454:780-783


3. PubMed ID: 19656888
   Analysis of human alphaherpesvirus microRNA expression in latently infected human trigeminal ganglia
   "Umbach JL, Nagel MA, Cohrs RJ, Gilden DH, Cullen BR"
   "J Virol (2009) 83:10677-10683