miRBase entry: dan-mir-13a

Stem-loop dan-mir-13a

Accession

MI0008957

Description

Drosophila ananassae dan-mir-13a precursor miRNA

Sequence

uacguaacuccucaaagggcugugaaauguugccauuaucuacucaUAUCACAGCCAUUUUGAUGAGUuucgug
((((.(((((.((((((((((((((.(((...............))).)))))))).)))))).))))).))))

Structure

    u     c      -        a   uugcca 
uacg aacuc ucaaag ggcuguga aug      u
|||| ||||| |||||| |||||||| |||      u
gugc uUGAG AGUUUU CCGACACU Uac      a
    u     U      A        A   ucaucu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_13340: 12827627-12827700 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dan-mir-13a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dan-miR-13a

Accession	MIMAT0008420
Description	Drosophila ananassae dan-miR-13a mature miRNA
Sequence	47 - UAUCACAGCCAUUUUGAUGAGU - 68
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218