miRBase entry: dan-mir-281-1

Stem-loop dan-mir-281-1

Accession

MI0008987

Description

Drosophila ananassae dan-mir-281-1 precursor miRNA

Gene family

MIPF0000087; mir-46

Sequence

cgaauacgugaauaAAGAGAGCUGUCCGUCGACAGUccagauaccuauaacacUGUCAUGGAAUUGCUCUCUUUGUauaauauucg
((((((.....(((((((((((..(((((.((((((...............)))))))))))...)))))))))))....))))))

Structure

      cguga           -UG     C      ccagau 
cgaaua     auaAAGAGAGC   UCCGU GACAGU      a
||||||     |||||||||||   ||||| ||||||      c
gcuuau     UGUUUCUCUCG   AGGUA CUGUca      c
      -aaua           UUA     -      caauau

Annotation confidence Not enough data

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Genome context

scaffold_13266: 2568753-2568838 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dan-mir-281-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dan-miR-281-3p

Accession	MIMAT0008429
Description	Drosophila ananassae dan-miR-281-3p mature miRNA
Sequence	54 - UGUCAUGGAAUUGCUCUCUUUGU - 76
Evidence	not_experimental

Mature dan-miR-281-1-5p

Accession	MIMAT0008428
Description	Drosophila ananassae dan-miR-281-1-5p mature miRNA
Sequence	15 - AAGAGAGCUGUCCGUCGACAGU - 36
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218