miRBase entry: dan-mir-317

Stem-loop dan-mir-317

Accession

MI0008988

Description

Drosophila ananassae dan-mir-317 precursor miRNA

Gene family

MIPF0000144; mir-317

Sequence

ugcaucggcugcugggauacacccugugcucgcuuugaaugaaaugcaagcaagUGAACACAGCUGGUGGUAUCCAGUggccguuuugcau
((((.(((((((((((...(((((((((.((((((.(..((.....))..))))))).)))))..))))...)))))))))))...)))).

Structure

-    --u           aua    --     c      u aa  a 
 ugca   cggcugcuggg   cacc  cugug ucgcuu g  ug a
 ||||   |||||||||||   ||||  ||||| |||||| |  || a
 acgu   gccggUGACCU   GUGG  GACAC AGUgaa c  ac u
u    uuu           AUG    UC     A      - ga  g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_13340: 6479993-6480083 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dan-mir-317

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dan-miR-317

Accession	MIMAT0008452
Description	Drosophila ananassae dan-miR-317 mature miRNA
Sequence	55 - UGAACACAGCUGGUGGUAUCCAGU - 78
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218