miRBase entry: der-mir-287

Stem-loop der-mir-287


Accession
MI0009022
Description
Drosophila erecta der-mir-287 precursor miRNA
Gene family
MIPF0000224; mir-287


Sequence

gacgcuggauguaugggugugugggcucugaaauuuugcacacauuuacaauaauuguaaaUGUGUUGAAAAUCGUUUGCACgacugcga
..(((..........(((((((((((...((..((((..((((((((((((...))))))))))))..)))))))))))))).)))))).

Structure
ga   uggauguaug   -        ucu  aa    gc            u 
  cgc          ggu gugugggc   ga  uuuu  acacauuuacaa  
  |||          ||| ||||||||   ||  ||||  |||||||||||| a
  gcg          uca CACGUUUG   CU  AAAA  UGUGUaaauguu  
-a   ----------   g        ---  --    GU            a 


Annotation confidence Not enough data
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Genome context
scaffold_4845: 6676092-6676181 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from der-mir-287
Name Accession Chromosome Start End Strand Confidence




Database links

Mature der-miR-287

Accession MIMAT0008483
Description Drosophila erecta der-miR-287 mature miRNA
Sequence 62 - UGUGUUGAAAAUCGUUUGCAC - 82
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218