Stem-loop der-let-7

Accession

MI0009025

Description

Drosophila erecta der-let-7 precursor miRNA

Literature search

3 open access papers mention der-let-7
(8 sentences)

Sequence

6341934 reads, 23588.0 reads per million, 19 experiments

ucuggcaaauUGAGGUAGUAGGUUGUAUAGUaguaauuacacaucauaCUAUACAAUGUGCUAGCUUUCUuugcuuga
((.((((((..(((.(((((.(((((((((((..............))))))))))).))))).)))..)))))).))

Structure

  u      uU   G     G           guaauu 
uc ggcaaa  GAG UAGUA GUUGUAUAGUa      a
|| ||||||  ||| ||||| |||||||||||       
ag ucguuU  UUC AUCGU UAACAUAUCau      c
  u      CU   G     G           acuaca 

Annotation confidence High

Genome context

scaffold_4845: 5799416-5799493 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from der-let-7

Mature der-let-7-5p

• Accession: MIMAT0008486
• Description: Drosophila erecta der-let-7-5p mature miRNA
• Sequence: 11 - UGAGGUAGUAGGUUGUAUAGU - 31
• Evidence: not_experimental

Mature der-let-7-3p

• Accession: MIMAT0053299
• Description: Drosophila erecta der-let-7-3p mature miRNA
• Sequence: 49 - CUAUACAAUGUGCUAGCUUUCU - 70
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218