Stem-loop der-mir-316

Accession

MI0009034

Description

Drosophila erecta der-mir-316 precursor miRNA

Sequence

561955 reads, 2190.0 reads per million, 19 experiments

aaauucuagucgauuUGUCUUUUUCCGCUUACUGGCGuuucauuucaacaacgACAGGAAAGGGAAAAAGGCGUAuucacuaugaguuu
((((((((((.(((.(((((((((((.(((.(((.((((..........)))).)))..)))))))))))))).))).)))).))))))

Structure

      -    c   u           G   -A   G    ucau 
aaauuc uagu gau UGUCUUUUUCC CUU  CUG CGuu    u
|||||| |||| ||| ||||||||||| |||  ||| ||||     
uuugag auca uuA GCGGAAAAAGG GAA  GAC gcaa    u
      u    c   U           -   AG   A    caac 

Annotation confidence High

Genome context

scaffold_4784: 21318823-21318911 [-]

Mature der-miR-316-5p

• Accession: MIMAT0008496
• Description: Drosophila erecta der-miR-316-5p mature miRNA
• Sequence: 16 - UGUCUUUUUCCGCUUACUGGCG - 37
• Evidence: not_experimental

Mature der-miR-316-3p

• Accession: MIMAT0053303
• Description: Drosophila erecta der-miR-316-3p mature miRNA
• Sequence: 54 - ACAGGAAAGGGAAAAAGGCGUA - 75
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218