miRBase entry: der-mir-13b-1

Stem-loop der-mir-13b-1


Accession
MI0009039
Description
Drosophila erecta der-mir-13b-1 precursor miRNA
Gene family
MIPF0000049; mir-2


Sequence

ccaugucguuaaaauguuugugaacuuauguauucgcaaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((.((((((...((((..........)))))))))).)))))))))))...)))

Structure
   -ug           u      acu    uauu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||     
ggu   AGCAGUUUUAC GACACU   AUac    g
   uUG           C      ---    uaac 


Annotation confidence Not enough data
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Genome context
scaffold_4770: 10769273-10769340 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from der-mir-13b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature der-miR-13b

Accession MIMAT0008484
Description Drosophila erecta der-miR-13b mature miRNA
Sequence 43 - UAUCACAGCCAUUUUGACGAGU - 64
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218