Stem-loop der-mir-281-2

Accession

MI0009040

Description

Drosophila erecta der-mir-281-2 precursor miRNA

Sequence

3667127 reads, 17203.0 reads per million, 19 experiments

cgaauugugaaaugAAGAGAGCUAUCCGUCGACAGUCaaguuaauaccgauuguaauaCUGUCAUGGAAUUGCUCUCUUUGuauaacauucg
(((((.((...(((((((((((..(((((.((((((.....((((....))))....)))))))))))...)))))))))))...)))))))

Structure

     u  gaa           -UA     C      Caagu    a 
cgaau gu   augAAGAGAGC   UCCGU GACAGU     uaau c
||||| ||   |||||||||||   ||||| ||||||     ||||  
gcuua ca   uGUUUCUCUCG   AGGUA CUGUCa     guua c
     -  aua           UUA     -      -uaau    g 

Annotation confidence High

Genome context

scaffold_4845: 17736415-17736506 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from der-mir-281-2

Mature der-miR-281-2-5p

• Accession: MIMAT0009183
• Description: Drosophila erecta der-miR-281-2-5p mature miRNA
• Sequence: 15 - AAGAGAGCUAUCCGUCGACAGUC - 37
• Evidence: not_experimental

Mature der-miR-281-3p

• Accession: MIMAT0008502
• Description: Drosophila erecta der-miR-281-3p mature miRNA
• Sequence: 59 - CUGUCAUGGAAUUGCUCUCUUUG - 81
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218