Stem-loop der-mir-263a

Accession

MI0009044

Description

Drosophila erecta der-mir-263a precursor miRNA

Literature search

1 open access papers mention der-mir-263a
(3 sentences)

Sequence

2605819 reads, 19123.0 reads per million, 19 experiments

gaucucggcacaGUUAAUGGCACUGGAAGAAUUCACGGGguacuuuugauacaacccgugaucucuuaguggcaucuauggugcgagaau
..(((((.(((.((..(((.((((((.(((..(((((((...............)))))))))).)))))).)))..)).))))))))..

Structure

ga     g   a  UA   G      A   AU       guacuu 
  ucucg cac GU  AUG CACUGG AGA  UCACGGG      u
  ||||| ||| ||  ||| |||||| |||  |||||||      u
  agagc gug ua  uac gugauu ucu  agugccc      g
ua     -   g  uc   g      c   --       aacaua 

Annotation confidence High

Genome context

scaffold_4929: 13456450-13456539 [+]

Mature der-miR-263a-5p

• Accession: MIMAT0053310
• Description: Drosophila erecta der-miR-263a-5p mature miRNA
• Sequence: 16 - AAUGGCACUGGAAGAAUUCACGGG - 39
• Evidence: not_experimental

Mature der-miR-263a-3p

• Accession: MIMAT0008506
• Description: Drosophila erecta der-miR-263a-3p mature miRNA
• Sequence: 13 - GUUAAUGGCACUGGAAGAAUUCAC - 36
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218