miRBase entry: der-mir-9b

Stem-loop der-mir-9b

Accession

MI0009045

Description

Drosophila erecta der-mir-9b precursor miRNA

Sequence

ugcauauuauuugcUCUUUGGUGAUUUUAGCUGUAUGguguguauguguuccauagagcuuuauuaccaaaaaccaaaugguuuuugca
((((.((((((((...(((((((((...((((.(((((............))))).))))..)))))))))...))))))))...))))

Structure

    --u        cUC         UUU    G     ugugu 
ugca   auuauuug   UUUGGUGAU   AGCU UAUGg     a
||||   ||||||||   |||||||||   |||| |||||      
acgu   ugguaaac   aaaccauua   ucga auacc     u
    uuu        caa         -uu    g     uugug

Annotation confidence Not enough data

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Genome context

scaffold_4845: 19768390-19768478 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from der-mir-9b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-9b

Accession	MIMAT0008507
Description	Drosophila erecta der-miR-9b mature miRNA
Sequence	15 - UCUUUGGUGAUUUUAGCUGUAUG - 37
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218