Stem-loop der-mir-34

Accession

MI0009046

Description

Drosophila erecta der-mir-34 precursor miRNA

Literature search

1 open access papers mention der-mir-34
(9 sentences)

Sequence

11845576 reads, 43016.0 reads per million, 19 experiments

uggcuaugcgcuuUGGCAGUGUGGUUAGCUGGUUGuguagccaaucauugcuugugacaacucaCAGCCACUAUCUUCACUGCCGCCgcgacaagc
..(((.(((((..((((((((.((.(((.((((((((.((....((((.....))))...))))))))))))).)).))))))))..))).)))))

Structure

ug   a  -   uu        U  U   C        u  ccaa    u 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug ag    ucau g
  ||| || |||  |||||||| || ||| |||||||| ||    |||| c
  cga ac gcg  GCCGUCAC UC AUC ACCGACac uc    agug u
--   -  a   CC        U  U   -        -  -aac    u 

Annotation confidence High

Genome context

scaffold_4770: 15673314-15673409 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from der-mir-34

Mature der-miR-34-5p

• Accession: MIMAT0008508
• Description: Drosophila erecta der-miR-34-5p mature miRNA
• Sequence: 14 - UGGCAGUGUGGUUAGCUGGUUG - 35
• Evidence: not_experimental

Mature der-miR-34-3p

• Accession: MIMAT0053312
• Description: Drosophila erecta der-miR-34-3p mature miRNA
• Sequence: 65 - CAGCCACUAUCUUCACUGCCGCC - 87
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218