Stem-loop der-mir-279

Accession

MI0009054

Description

Drosophila erecta der-mir-279 precursor miRNA

Literature search

1 open access papers mention der-mir-279
(1 sentences)

Sequence

1576281 reads, 6081.0 reads per million, 19 experiments

auacuacuguuuuuaGUGGGUGGGGGUCCAGUGUUUCACAuugauuuucuuaguauuugUGACUAGAUCCACACUCAUUAAuaacgguaguuc
..(((((((((.((((((((((.(((((.((....(((((...(((.....)))...))))))).))))).)))))))))).)))))))))..

Structure

au         u          G     C  UGUU     uug   u 
  acuacuguu uuaGUGGGUG GGGUC AG    UCACA   auu u
  ||||||||| |||||||||| ||||| ||    |||||   ||| c
  ugauggcaa AAUUACUCAC CCUAG UC    AGUgu   uga u
cu         u          A     A  ----     uua   u 

Annotation confidence Medium

Genome context

scaffold_4820: 2989065-2989157 [-]

Mature der-miR-279-5p

• Accession: MIMAT0053318
• Description: Drosophila erecta der-miR-279-5p mature miRNA
• Sequence: 16 - GUGGGUGGGGGUCCAGUGUUUCACA - 40
• Evidence: not_experimental

Mature der-miR-279-3p

• Accession: MIMAT0008515
• Description: Drosophila erecta der-miR-279-3p mature miRNA
• Sequence: 60 - UGACUAGAUCCACACUCAUUAA - 81
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218