Stem-loop der-mir-277

Accession

MI0009056

Description

Drosophila erecta der-mir-277 precursor miRNA

Sequence

1598106 reads, 6529.0 reads per million, 19 experiments

uugaagguuuugggcugCGUGUCAGGAGUGCAUUUGCacugaaacuaucugaagcaugUAAAUGCACUAUCUGGUACGACAuuccagaacguacaauc
(((.(.((((((((.(((((((((((((((((((((((.((...(.....)...)))))))))))))).))))))))).)).)))))))).).)))..

Structure

--   a g        c  -         -            c  aaa u 
  uug a guuuuggg ug CGUGUCAGG AGUGCAUUUGCa ug   c a
  ||| | |||||||| || ||||||||| |||||||||||| ||   | u
  aac u caagaccu AC GCAUGGUCU UCACGUAAAUgu ac   g c
cu   a g        u  A         A            -  gaa u 

Annotation confidence High

Genome context

scaffold_4770: 15674296-15674393 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from der-mir-277

Mature der-miR-277-5p

• Accession: MIMAT0053320
• Description: Drosophila erecta der-miR-277-5p mature miRNA
• Sequence: 18 - CGUGUCAGGAGUGCAUUUGC - 37
• Evidence: not_experimental

Mature der-miR-277-3p

• Accession: MIMAT0008517
• Description: Drosophila erecta der-miR-277-3p mature miRNA
• Sequence: 59 - UAAAUGCACUAUCUGGUACGACA - 81
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218