Stem-loop der-mir-2a-1

Accession

MI0009059

Description

Drosophila erecta der-mir-2a-1 precursor miRNA

Literature search

1 open access papers mention der-mir-2a-1
(3 sentences)

Sequence

9237302 reads, 35445.0 reads per million, 19 experiments

gcugggCUCUCAAAGUGGUUGUGAAAUGcauaucagcuuugcgcggcaUAUCACAGCCAGCUUUGAUGAGCUuagc
((((((((((((((((((((((((.((((......((...))...)))).))))))))).)))))).)))))))))

Structure

         -      -         A    auauca  u 
gcugggCUC UCAAAG UGGUUGUGA AUGc      gc  
||||||||| |||||| ||||||||| ||||      || u
cgauUCGAG AGUUUC ACCGACACU Uacg      cg  
         U      G         A    ---gcg  u 

Annotation confidence High

Genome context

scaffold_4845: 4719807-4719882 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from der-mir-2a-1

Mature der-miR-2a-1-5p

• Accession: MIMAT0053315
• Description: Drosophila erecta der-miR-2a-1-5p mature miRNA
• Sequence: 7 - CUCUCAAAGUGGUUGUGAAAUG - 28
• Evidence: not_experimental

Mature der-miR-2a-3p

• Accession: MIMAT0008510
• Description: Drosophila erecta der-miR-2a-3p mature miRNA
• Sequence: 49 - UAUCACAGCCAGCUUUGAUGAGCU - 72
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218