miRBase entry: der-mir-2a-1

Stem-loop der-mir-2a-1

Accession

MI0009059

Description

Drosophila erecta der-mir-2a-1 precursor miRNA

Sequence

gcugggcucucaaagugguugugaaaugcauaucagcuuugcgcggcaUAUCACAGCCAGCUUUGAUGAGCuuagc
((((((((((((((((((((((((.((((......((...))...)))).))))))))).)))))).)))))))))

Structure

         -      -         a    auauca  u 
gcugggcuc ucaaag ugguuguga augc      gc  
||||||||| |||||| ||||||||| ||||      || u
cgauuCGAG AGUUUC ACCGACACU Uacg      cg  
         U      G         A    ---gcg  u

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_4845: 4719807-4719882 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from der-mir-2a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-2a

Accession	MIMAT0008510
Description	Drosophila erecta der-miR-2a mature miRNA
Sequence	49 - UAUCACAGCCAGCUUUGAUGAGC - 71
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218