Stem-loop der-mir-125

Accession

MI0009066

Description

Drosophila erecta der-mir-125 precursor miRNA

Literature search

1 open access papers mention der-mir-125
(1 sentences)

Sequence

458056 reads, 2029.0 reads per million, 19 experiments

gacaugugcaaauguuuguauggcugauUCCCUGAGACCCUAACUUGUGAcuuuuaauaccaguuucACAAGUUUUGAUCUCCGGUAUuggacgcaaacuugcugauguu
(((((..((((..((((((....(((((..((.((((.(..(((((((((...............)))))))))..).)))).)).)))))..))))))))))..)))))

Structure

     gu    au      augg     UC  U    C CU         cuuuua 
gacau  gcaa  guuugu    cugau  CC GAGA C  AACUUGUGA      a
|||||  ||||  ||||||    |||||  || |||| |  |||||||||      u
uugua  cguu  caaacg    gguUA  GG CUCU G  UUGAACAcu      a
     gu    --      --ca     -U  C    A UU         uugacc 

Annotation confidence High

Genome context

scaffold_4845: 5799104-5799213 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from der-mir-125

Mature der-miR-125-5p

• Accession: MIMAT0008526
• Description: Drosophila erecta der-miR-125-5p mature miRNA
• Sequence: 29 - UCCCUGAGACCCUAACUUGUGA - 50
• Evidence: not_experimental

Mature der-miR-125-3p

• Accession: MIMAT0053324
• Description: Drosophila erecta der-miR-125-3p mature miRNA
• Sequence: 68 - ACAAGUUUUGAUCUCCGGUAU - 88
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218