Stem-loop der-mir-305

Accession

MI0009067

Description

Drosophila erecta der-mir-305 precursor miRNA

Sequence

566728 reads, 3161.0 reads per million, 19 experiments

caugucuAUUGUACUUCAUCAGGUGCUCUGgugugguccguaaccCGGCACAUGUUGAAGUACACUCAauaug
(((((....(((((((((.((.(((((..((.((........))))))))).)).)))))))))....)))))

Structure

     cuAU         U  G     CU  u  ggu 
caugu    UGUACUUCA CA GUGCU  Gg gu   c
|||||    ||||||||| || |||||  || ||    
guaua    ACAUGAAGU GU CACGG  Cc ca   c
     ACUC         U  A     --  -  aug 

Annotation confidence High

Genome context

scaffold_4929: 16344698-16344770 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from der-mir-305

Mature der-miR-305-5p

• Accession: MIMAT0008527
• Description: Drosophila erecta der-miR-305-5p mature miRNA
• Sequence: 8 - AUUGUACUUCAUCAGGUGCUCUG - 30
• Evidence: not_experimental

Mature der-miR-305-3p

• Accession: MIMAT0053325
• Description: Drosophila erecta der-miR-305-3p mature miRNA
• Sequence: 46 - CGGCACAUGUUGAAGUACACUCA - 68
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218