Stem-loop der-mir-1

Accession

MI0009075

Description

Drosophila erecta der-mir-1 precursor miRNA

Sequence

28102868 reads, 107072.0 reads per million, 19 experiments

cagccugugagaguuCCAUGCUUCCUUGCAUUCAAUAguuauacucaagcauaUGGAAUGUAAAGAAGUAUGGAGcgaaaucuggcga
..(((.(.....((((((((((((.((((((((.((((((.......))).))).)))))))).)))))))))))).....).)))..

Structure

ca   u ugaga            C        A   -   au 
  gcc g     guuCCAUGCUUC UUGCAUUC AUA guu  a
  ||| |     |||||||||||| |||||||| ||| |||  c
  cgg c     cGAGGUAUGAAG AAUGUAAG Uau cga  u
ag   u uaaag            A        G   a   ac 

Annotation confidence High

Genome context

scaffold_4845: 3954276-3954363 [-]

Mature der-miR-1-5p

• Accession: MIMAT0053332
• Description: Drosophila erecta der-miR-1-5p mature miRNA
• Sequence: 16 - CCAUGCUUCCUUGCAUUCAAUA - 37
• Evidence: not_experimental

Mature der-miR-1-3p

• Accession: MIMAT0008534
• Description: Drosophila erecta der-miR-1-3p mature miRNA
• Sequence: 54 - UGGAAUGUAAAGAAGUAUGGAG - 75
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218