Stem-loop der-mir-2c

Accession

MI0009081

Description

Drosophila erecta der-mir-2c precursor miRNA

Literature search

2 open access papers mention der-mir-2c
(11 sentences)

Sequence

3103186 reads, 12260.0 reads per million, 19 experiments

ucguaucuuacuuucaaugUCAUCAAAAAGGGCUGAAGAAAgauauuucugcauuugaaucgUAUCACAGCCAGCUUUGAUGGGCauugcaaugagcaucga
(((...((((.((.(((((((((((((...(((((......((((((((.......)))..))))).)))))...)))))).))))))).))))))...)))

Structure

   uau    c  u       -      AAG     AAGAAA     --   ug 
ucg   cuua uu caaugUC AUCAAA   GGCUG      gauau  uuc  c
|||   |||| || ||||||| ||||||   |||||      |||||  |||  a
agc   gagu aa guuaCGG UAGUUU   CCGAC      CUAUg  aag  u
   uac    -  c       G      CGA     -----A     cu   uu 

Annotation confidence High

Genome context

scaffold_4770: 10769607-10769708 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from der-mir-2c

Mature der-miR-2c-5p

• Accession: MIMAT0053337
• Description: Drosophila erecta der-miR-2c-5p mature miRNA
• Sequence: 20 - UCAUCAAAAAGGGCUGAAGAAA - 41
• Evidence: not_experimental

Mature der-miR-2c-3p

• Accession: MIMAT0008540
• Description: Drosophila erecta der-miR-2c-3p mature miRNA
• Sequence: 63 - UAUCACAGCCAGCUUUGAUGGGC - 85
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218