Stem-loop der-mir-87

Accession

MI0009085

Description

Drosophila erecta der-mir-87 precursor miRNA

Sequence

81996 reads, 314.0 reads per million, 19 experiments

cauauuucauUCGCGCCUGUAUCUUGCUGAACcguugccauuauggccuacgauccggUUGAGCAAAAUUUCAGGUGUGugagaaauuuguu
((.(((((.(.((((((((.((.(((((.(((((..((((...))))........))))).))))).))..)))))))).).))))).))..

Structure

--  u     a U        -U  C     G     ------uu    u 
  ca auuuc u CGCGCCUG  AU UUGCU AACcg        gcca  
  || ||||| | ||||||||  || ||||| |||||        |||| u
  gu uaaag g GUGUGGAC  UA AACGA UUggc        cggu  
uu  u     a u        UU  A     G     cuagcauc    a 

Annotation confidence Medium

Genome context

scaffold_4929: 10570551-10570642 [-]

Mature der-miR-87-5p

• Accession: MIMAT0053341
• Description: Drosophila erecta der-miR-87-5p mature miRNA
• Sequence: 11 - UCGCGCCUGUAUCUUGCUGAAC - 32
• Evidence: not_experimental

Mature der-miR-87-3p

• Accession: MIMAT0008544
• Description: Drosophila erecta der-miR-87-3p mature miRNA
• Sequence: 59 - UUGAGCAAAAUUUCAGGUGUG - 79
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218