Stem-loop der-mir-33

Accession

MI0009086

Description

Drosophila erecta der-mir-33 precursor miRNA

Sequence

1912126 reads, 7480.0 reads per million, 19 experiments

cagagaugacacgaAGGUGCAUUGUAGUCGCAUUGucugucccaauugcuucaggCAAUACAACUUCAGUGCAAGCUcugugcauuucac
..((((((.((((.((.(((((((.(((.(.((((((((............)))))))).).))).)))))))..)).))))))))))..

Structure

ca      a    a  -G       U   C C        uccca 
  gagaug cacg AG  UGCAUUG AGU G AUUGucug     a
  |||||| |||| ||  ||||||| ||| | ||||||||      
  cuuuac gugu UC  ACGUGAC UCA C UAACggac     u
ca      -    c  GA       U   A A        uucgu 

Annotation confidence High

Genome context

scaffold_4784: 19550587-19550676 [+]

Mature der-miR-33-5p

• Accession: MIMAT0008545
• Description: Drosophila erecta der-miR-33-5p mature miRNA
• Sequence: 15 - AGGUGCAUUGUAGUCGCAUUG - 35
• Evidence: not_experimental

Mature der-miR-33-3p

• Accession: MIMAT0053342
• Description: Drosophila erecta der-miR-33-3p mature miRNA
• Sequence: 56 - CAAUACAACUUCAGUGCAAGCU - 77
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218