Stem-loop der-mir-124

Accession

MI0009088

Description

Drosophila erecta der-mir-124 precursor miRNA

Literature search

2 open access papers mention der-mir-124
(3 sentences)

Sequence

1743551 reads, 6400.0 reads per million, 19 experiments

uacguuuuucuccuGGUAUCCACUGUAGGCCUAUAUGuauuuccaccaUAAGGCACGCGGUGAAUGCCAAGagcgaacgca
..(((((..(((.((((((.((((((..((((.((((.........))))))))..)))))).)))))).))).)))))..

Structure

ua     uu   c      C      AG    A    uau 
  cguuu  cuc uGGUAU CACUGU  GCCU UAUG   u
  |||||  ||| |||||| ||||||  |||| ||||   u
  gcaag  gaG ACCGUA GUGGCG  CGGA AUac   c
ac     -c   A      A      CA    -    cac 

Annotation confidence High

Genome context

scaffold_4845: 6683979-6684059 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from der-mir-124

Mature der-miR-124-5p

• Accession: MIMAT0053344
• Description: Drosophila erecta der-miR-124-5p mature miRNA
• Sequence: 15 - GGUAUCCACUGUAGGCCUAUAUG - 37
• Evidence: not_experimental

Mature der-miR-124-3p

• Accession: MIMAT0008547
• Description: Drosophila erecta der-miR-124-3p mature miRNA
• Sequence: 49 - UAAGGCACGCGGUGAAUGCCAAG - 71
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218