miRBase entry: der-mir-288

Stem-loop der-mir-288

Accession

MI0009093

Description

Drosophila erecta der-mir-288 precursor miRNA

Sequence

cggucaugucguaauuagcggagcucggcguugccggcgauaauuaaugacgguggucacguuggUUUCAUGUCGAUUUCAUUUCAGGacacggccg
(((((.((((.(....((.((((.(((((((.(((((((........((((....)))))))))))...))))))))))).))..).)))).)))))

Structure

     a    g aauu  c    c       --u       auaauuaa    g 
cgguc uguc u    ag ggag ucggcgu   gccggcg        ugac g
||||| |||| |    || |||| |||||||   |||||||        ||||  
gccgg acaG A    UU CUUU AGCUGUA   Ugguugc        acug u
     c    G --CU  A    -       CUU       --------    g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_4845: 3835108-3835204 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from der-mir-288

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature der-miR-288

Accession	MIMAT0008551
Description	Drosophila erecta der-miR-288 mature miRNA
Sequence	66 - UUUCAUGUCGAUUUCAUUUCAGG - 88
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218