miRBase entry: dgr-mir-9b

Stem-loop dgr-mir-9b

Accession

MI0009122

Description

Drosophila grimshawi dgr-mir-9b precursor miRNA

Sequence

ugcauauuauuugcUCUUUGGUGAUUUUAGCUCUAUGgugugcgcauaauccacagagcuuuauuaccaaaaaccaaaugguuuuugca
((((.((((((((...(((((((((...((((((.(((............))).))))))..)))))))))...))))))))...))))

Structure

    --u        cUC         UUU      A   ugugc 
ugca   auuauuug   UUUGGUGAU   AGCUCU UGg     g
||||   ||||||||   |||||||||   |||||| |||      
acgu   ugguaaac   aaaccauua   ucgaga acc     c
    uuu        caa         -uu      c   uaaua

Annotation confidence Not enough data

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Genome context

scaffold_14978: 831298-831386 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dgr-mir-9b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-9b

Accession	MIMAT0008582
Description	Drosophila grimshawi dgr-miR-9b mature miRNA
Sequence	15 - UCUUUGGUGAUUUUAGCUCUAUG - 37
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218