miRBase entry: dgr-mir-13a

Stem-loop dgr-mir-13a

Accession

MI0009168

Description

Drosophila grimshawi dgr-mir-13a precursor miRNA

Sequence

ugcguaacucuucaagggguugugaaauguggguauuaucaagucaUAUCACAGCCAUUUUGAUGAGUuucgug
.(((.(((((.((((((((((((((..(((((.(.......).))))))))))))).)))))).))))).))).

Structure

u   u     u      -        aa     g au 
 gcg aacuc ucaagg gguuguga  ugugg u  u
 ||| ||||| |||||| ||||||||  ||||| |  a
 ugc uUGAG AGUUUU CCGACACU  AUacu a  u
g   u     U      A        --     g ac

Annotation confidence Not enough data

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Genome context

scaffold_14906: 4357687-4357760 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dgr-mir-13a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-13a

Accession	MIMAT0008617
Description	Drosophila grimshawi dgr-miR-13a mature miRNA
Sequence	47 - UAUCACAGCCAUUUUGAUGAGU - 68
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218