miRBase entry: dgr-mir-34

Stem-loop dgr-mir-34

Accession

MI0009170

Description

Drosophila grimshawi dgr-mir-34 precursor miRNA

Sequence

uggcuaugcgcuuUGGCAGUGUGGUUAGCUGGUUGuguggccaacugacaaaucacagccacuaucuucacugccgccgcgacaagc
..(((.(((((..((((((((.((.(((.((((((((................))))))))))).)).))))))))..))).)))))

Structure

ug   a  -   uu        U  U   C        uggccaa 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug       c
  ||| || |||  |||||||| || ||| ||||||||        
  cga ac gcg  gccgucac uc auc accgacac       u
--   -  a   cc        u  u   -        uaaacag

Annotation confidence Not enough data

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Genome context

scaffold_14624: 2267449-2267535 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dgr-mir-34

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-34

Accession	MIMAT0008619
Description	Drosophila grimshawi dgr-miR-34 mature miRNA
Sequence	14 - UGGCAGUGUGGUUAGCUGGUUG - 35
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218