miRBase entry: dgr-mir-5-2

Stem-loop dgr-mir-5-2

Accession

MI0009175

Description

Drosophila grimshawi dgr-mir-5-2 precursor miRNA

Sequence

gcuaAAAGGAACGAUCGUUGUGAUAUGcguucauuaaaucguuacauaucacagugauuuuccuuuauagcgc
(((((((((((.(((((((((((((((((..........))...)))))))))))))))))))))).))))..

Structure

--    -       C               ---  uuca 
  gcua AAAGGAA GAUCGUUGUGAUAUG   cg    u
  |||| ||||||| |||||||||||||||   ||     
  cgau uuuccuu uuagugacacuauac   gc    u
cg    a       -               auu  uaaa

Annotation confidence Not enough data

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Genome context

scaffold_5621: 3132-3204 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dgr-mir-5-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-5

Accession	MIMAT0008570
Description	Drosophila grimshawi dgr-miR-5 mature miRNA
Sequence	5 - AAAGGAACGAUCGUUGUGAUAUG - 27
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218