miRBase entry: dgr-mir-275

Stem-loop dgr-mir-275

Accession

MI0009179

Description

Drosophila grimshawi dgr-mir-275 precursor miRNA

Sequence

gucguuuaccgcgcgcgcuaaucagugaccggggcugguuuugauuaucccacagUCAGGUACCUGAAGUAGCGCGCGugguggccagacgc
(((..(((((((((((((((.((((..(((..(((((...............))))).)))..))))..)))))))))))))))...)))..

Structure

--   -gu               -a    ug   gg     guuuug 
  guc   uuaccgcgcgcgcua  ucag  acc  ggcug      a
  |||   |||||||||||||||  ||||  |||  |||||      u
  cag   ggugguGCGCGCGAU  AGUC  UGG  CUgac      u
cg   acc               GA    CA   -A     acccua

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_15126: 5008401-5008492 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dgr-mir-275

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-275

Accession	MIMAT0008625
Description	Drosophila grimshawi dgr-miR-275 mature miRNA
Sequence	56 - UCAGGUACCUGAAGUAGCGCGCG - 78
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218