miRBase entry: dgr-mir-2c

Stem-loop dgr-mir-2c

Accession

MI0009180

Description

Drosophila grimshawi dgr-mir-2c precursor miRNA

Sequence

caugucuuacuuucaaugucaucaaaaagggcugagaaugauauaucugcaauugaaucgUAUCACAGCCAGCUUUGAUGGGCauugcaaagggca
..((((...(((((((((((((((((...(((((.(((((((.((........)).))))).)).)))))...)))))).))))))).))))))))

Structure

ca    uua    -       -      aag     a  -     a  ucu 
  uguc   cuuu caauguc aucaaa   ggcug ga augau ua   g
  ||||   |||| ||||||| ||||||   ||||| || ||||| ||    
  acgg   gaaa guuaCGG UAGUUU   CCGAC CU Ugcua gu   c
--    ---    c       G      CGA     A  A     a  uaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_14906: 4357884-4357979 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dgr-mir-2c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dgr-miR-2c

Accession	MIMAT0008626
Description	Drosophila grimshawi dgr-miR-2c mature miRNA
Sequence	61 - UAUCACAGCCAGCUUUGAUGGGC - 83
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218