miRBase entry: dmo-mir-288

Stem-loop dmo-mir-288

Accession

MI0009228

Description

Drosophila mojavensis dmo-mir-288 precursor miRNA

Sequence

ggacgcgucguaauuagcugugcacagcguugcuggcgauaauuaaugacguuggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
((.((.(((((((((.((((.((.((((((.(((((((...........))))))).))))))))..)).)).)))).......))))).)).)).

Structure

-  a  c     -------    a  -  -u  a      u       auaa 
 gg cg gucgu       aauu gc ug  gc cagcgu gcuggcg    u
 || || |||||       |||| || ||  || |||||| |||||||    u
 cc gc caGUA       UUAG UG AC  Ug guugca ugguugc    a
g  g  a     CUUUACU    C  U  UU  -      c       agua

Annotation confidence Not enough data

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Genome context

scaffold_6500: 24709800-24709895 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dmo-mir-288

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dmo-miR-288

Accession	MIMAT0008675
Description	Drosophila mojavensis dmo-miR-288 mature miRNA
Sequence	65 - UUUCAUGUCGAUUUCAUUUCAUG - 87
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218