miRBase entry: dpe-mir-13a

Stem-loop dpe-mir-13a

Accession

MI0009260

Description

Drosophila persimilis dpe-mir-13a precursor miRNA

Sequence

uacguaacccaucaaacgguugugaaauguugcauuuaucaaaucaUAUCACAGCCAUUUUGAUGAGUuucgug
((((.(((.(((((((.((((((((.(((...............))).))))))))..))))))).))).))))

Structure

    u   c       -c        a   uugcau 
uacg aac caucaaa  gguuguga aug      u
|||| ||| |||||||  |||||||| |||      u
gugc uUG GUAGUUU  CCGACACU Uac      a
    u   A       UA        A   uaaacu

Annotation confidence Not enough data

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Genome context

scaffold_0: 10660083-10660156 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dpe-mir-13a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-13a

Accession	MIMAT0008706
Description	Drosophila persimilis dpe-miR-13a mature miRNA
Sequence	47 - UAUCACAGCCAUUUUGAUGAGU - 68
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218