miRBase entry: dpe-mir-133

Stem-loop dpe-mir-133

Accession

MI0009266

Description

Drosophila persimilis dpe-mir-133 precursor miRNA

Sequence

uacaacggcuguauguagcugguugacaucgggucagaucuauuuuaucaaguauUUGGUCCCCUUCAACCAGCUGUaucagugguugau
..((((.((((.((((((((((((((....(((((((((((.........)).)))))).)))..)))))))))))))))))).))))..

Structure

ua    g    u              cauc   -      -  auu 
  caac gcug auguagcugguuga    ggg ucagau cu   u
  |||| |||| ||||||||||||||    ||| |||||| ||   u
  guug ugac uaUGUCGACCAACU    CCC GGUUua ga   a
ua    g    -              --UC   U      u  acu

Annotation confidence Not enough data

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Genome context

scaffold_1: 9145735-9145824 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dpe-mir-133

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-133

Accession	MIMAT0008712
Description	Drosophila persimilis dpe-miR-133 mature miRNA
Sequence	56 - UUGGUCCCCUUCAACCAGCUGU - 77
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218