miRBase entry: dpe-mir-34

Stem-loop dpe-mir-34

Accession

MI0009269

Description

Drosophila persimilis dpe-mir-34 precursor miRNA

Sequence

uggcuaugcgcuuUGGCAGUGUGGUUAGCUGGUUGuguagccaaaauauugccuuugaccauucacagccacuaucuucacugccgccgcgacaagc
..(((.(((((..((((((((.((.(((.((((((((..(.((((........)))).)....))))))))))).)).))))))))..))).)))))

Structure

ug   a  -   uu        U  U   C        --ua c    aua 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g caaa   u
  ||| || |||  |||||||| || ||| ||||||||    | ||||    
  cga ac gcg  gccgucac uc auc accgacac    c guuu   u
--   -  a   cc        u  u   -        uuac a    ccg

Annotation confidence Not enough data

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Genome context

scaffold_19: 725010-725106 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dpe-mir-34

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-34

Accession	MIMAT0008715
Description	Drosophila persimilis dpe-miR-34 mature miRNA
Sequence	14 - UGGCAGUGUGGUUAGCUGGUUG - 35
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218