miRBase entry: dpe-mir-125-1

Stem-loop dpe-mir-125-1

Accession

MI0009286

Description

Drosophila persimilis dpe-mir-125-1 precursor miRNA

Sequence

gacaugugcaaauguuuguauggcugauUCCCUGAGACCCUAACUUGUGAcuuuuaauaccaguuucacaaguuuugaucuccgguauuggacgcaaacuugcugauguu
(((((..((((..((((((....(((((..((.((((.(..(((((((((...............)))))))))..).)))).)).)))))..))))))))))..)))))

Structure

     gu    au      augg     UC  U    C CU         cuuuua 
gacau  gcaa  guuugu    cugau  CC GAGA C  AACUUGUGA      a
|||||  ||||  ||||||    |||||  || |||| |  |||||||||      u
uugua  cguu  caaacg    gguua  gg cucu g  uugaacacu      a
     gu    --      --ca     -u  c    a uu         uugacc

Annotation confidence Not enough data

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Genome context

scaffold_1: 5116595-5116704 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dpe-mir-125-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-125

Accession	MIMAT0008725
Description	Drosophila persimilis dpe-miR-125 mature miRNA
Sequence	29 - UCCCUGAGACCCUAACUUGUGA - 50
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218