miRBase entry: dpe-mir-13b-1

Stem-loop dpe-mir-13b-1

Accession

MI0009291

Description

Drosophila persimilis dpe-mir-13b-1 precursor miRNA

Sequence

ccaugucguuaaaauguuugugaccuuauguacucuugaaucaUAUCACAGCCAUUUUGACGAGUuugg
(((..(((((((((((.((((((...((((...........)))))))))).)))))))))))...)))

Structure

   -ug           u      ccu    uacu 
cca   ucguuaaaaug uuguga   uaug    c
|||   ||||||||||| ||||||   ||||    u
ggu   AGCAGUUUUAC GACACU   AUac    u
   uUG           C      ---    uaag

Annotation confidence Not enough data

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Genome context

scaffold_0: 10659936-10660004 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from dpe-mir-13b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-13b

Accession	MIMAT0008711
Description	Drosophila persimilis dpe-miR-13b mature miRNA
Sequence	44 - UAUCACAGCCAUUUUGACGAGU - 65
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218