miRBase entry: dpe-mir-9c

Stem-loop dpe-mir-9c

Accession

MI0009303

Description

Drosophila persimilis dpe-mir-9c precursor miRNA

Sequence

auuuuugcuguuUCUUUGGUAUUCUAGCUGUAGAuuguuuuuugcacauuguauaucaucuaaagcuuuuauaccaaagcuccagcuuaaau
((((..((((...(((((((((...((((.(((((.(.....((((...))))...)))))).))))...)))))))))...))))..))))

Structure

    uu    uuU         UCU    G     u uuuuu    c 
auuu  gcug   CUUUGGUAU   AGCU UAGAu g     ugca  
||||  ||||   |||||||||   |||| ||||| |     |||| a
uaaa  cgac   gaaaccaua   ucga aucua c     augu  
    uu    cuc         uuu    a     - --uau    u

Annotation confidence Not enough data

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Genome context

scaffold_1: 9894317-9894408 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dpe-mir-9c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-9c

Accession	MIMAT0008746
Description	Drosophila persimilis dpe-miR-9c mature miRNA
Sequence	13 - UCUUUGGUAUUCUAGCUGUAGA - 34
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218