miRBase entry: dpe-mir-288

Stem-loop dpe-mir-288

Accession

MI0009310

Description

Drosophila persimilis dpe-mir-288 precursor miRNA

Sequence

ggccaugucguaauuagcaggguacagcguugccggcgaaaauuaaugacguuggucacguuggUUUCAUGUCGAUUUCAUUUCAUGacacggccg
((((.((((((((((.((((((..((((((.(((((((...........))))))).))))))..))).))).)))).......)))))).)))).

Structure

-    a      -------    a   -   ua      u       aaaa 
 ggcc ugucgu       aauu gca ggg  cagcgu gccggcg    u
 |||| ||||||       |||| ||| |||  |||||| |||||||    u
 ccgg acaGUA       UUAG UGU CUU  guugca ugguugc    a
g    c      CUUUACU    C   A   Ug      c       agua

Annotation confidence Not enough data

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Genome context

scaffold_1: 9142380-9142475 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from dpe-mir-288

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-288

Accession	MIMAT0008753
Description	Drosophila persimilis dpe-miR-288 mature miRNA
Sequence	65 - UUUCAUGUCGAUUUCAUUUCAUG - 87
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218