miRBase entry: dpe-mir-306

Stem-loop dpe-mir-306

Accession

MI0009319

Description

Drosophila persimilis dpe-mir-306 precursor miRNA

Sequence

cacuuugccggcUCAGGUACUUAGUGACUCUCAAugcuuucgacaucuugagagucucucugugccugcacuggcggugg
((((..(((((..(((((((..((.((((((((((((....).)))..)))))))).))..)))))))..))))))))).

Structure

-    uu     cU       UU  U        --   - u 
 cacu  gccgg  CAGGUAC  AG GACUCUCA  Aug c u
 ||||  |||||  |||||||  || ||||||||  ||| |  
 gugg  cgguc  guccgug  uc cugagagu  uac g u
g    --     ac       uc  u        uc   a c

Annotation confidence Not enough data

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Genome context

scaffold_1: 9894939-9895018 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dpe-mir-306

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-306

Accession	MIMAT0008759
Description	Drosophila persimilis dpe-miR-306 mature miRNA
Sequence	13 - UCAGGUACUUAGUGACUCUCAA - 34
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218