miRBase entry: dpe-mir-309

Stem-loop dpe-mir-309

Accession

MI0009320

Description

Drosophila persimilis dpe-mir-309 precursor miRNA

Sequence

auuauacgauaaacuuuguucaguuuugccaacuugcuugcaGCACUGGGUGAAGUUUGUCUUAuaau
((((((.(((((((((((((((((.((((..........)))).))))))))))))))))).))))))

Structure

      c                 u    caac 
auuaua gauaaacuuuguucagu uugc    u
|||||| ||||||||||||||||| ||||     
uaauAU CUGUUUGAAGUGGGUCA Gacg    u
      U                 C    uucg

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_2: 8905710-8905777 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dpe-mir-309

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-309

Accession	MIMAT0008760
Description	Drosophila persimilis dpe-miR-309 mature miRNA
Sequence	43 - GCACUGGGUGAAGUUUGUCUUA - 64
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218