miRBase entry: dpe-mir-100-1

Stem-loop dpe-mir-100-1

Accession

MI0009324

Description

Drosophila persimilis dpe-mir-100-1 precursor miRNA

Sequence

ccauuaacagaAACCCGUAAUUCCGAACUUGUGcuguuuuauaucuguuacaagaccggcauuaugggagucugucaaugca
.((((.(((((..((((((((.(((..(((((((.(........).).))))))..))).))))))))..))))).))))..

Structure

-c    a     AA        U   AA      - u uuu 
  cauu acaga  CCCGUAAU CCG  CUUGUG c g   u
  |||| |||||  |||||||| |||  |||||| | |    
  guaa ugucu  ggguauua ggc  gaacau g c   a
ac    c     ga        c   ca      u u uau

Annotation confidence Not enough data

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Genome context

scaffold_1: 5115324-5115405 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from dpe-mir-100-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dpe-miR-100

Accession	MIMAT0008718
Description	Drosophila persimilis dpe-miR-100 mature miRNA
Sequence	12 - AACCCGUAAUUCCGAACUUGUG - 33
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218