miRBase entry: dse-mir-2c

Stem-loop dse-mir-2c

Accession

MI0009339

Description

Drosophila sechellia dse-mir-2c precursor miRNA

Sequence

ucguaucuuacuuucaaugucaucaaaaagggcugaagaaagauauuucugcauuugaaucgUAUCACAGCCAGCUUUGAUGGGCauugcaaugagcagcga
((((..((((.((.(((((((((((((...(((((......((((((((.......)))..))))).)))))...)))))).))))))).))))))..))))

Structure

    au    c  u       -      aag     aagaaa     --   ug 
ucgu  cuua uu caauguc aucaaa   ggcug      gauau  uuc  c
||||  |||| || ||||||| ||||||   |||||      |||||  |||  a
agcg  gagu aa guuaCGG UAGUUU   CCGAC      CUAUg  aag  u
    ac    -  c       G      CGA     -----A     cu   uu

Annotation confidence Not enough data

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Genome context

scaffold_0: 10704844-10704945 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from dse-mir-2c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-2c

Accession	MIMAT0008777
Description	Drosophila sechellia dse-miR-2c mature miRNA
Sequence	63 - UAUCACAGCCAGCUUUGAUGGGC - 85
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218