Stem-loop dse-mir-278

Accession

MI0009343

Description

Drosophila sechellia dse-mir-278 precursor miRNA

Sequence

11422 reads, 3595.0 reads per million, 1 experiments

guaaugguacggugcgaCCGGAUGAUGGUUCACAACGACCguguccuuuaaacgggUCGGUGGGACUUUCGUCCGUUUguaacgccauuug
..((((((....(((((.(((((((.(((((.((.(((((.(((.......)))))))).))))))).))))))).)))))..))))))..

Structure

gu      acgg     C       U     A  A     g   cc 
  aauggu    ugcga CGGAUGA GGUUC CA CGACC ugu  u
  ||||||    ||||| ||||||| ||||| || ||||| |||  u
  uuaccg    augUU GCCUGCU UCAGG GU GCUgg gca  u
gu      --ca     U       U     -  G     -   aa 

Annotation confidence High

Genome context

scaffold_1: 9037621-9037711 [+]

Mature dse-miR-278-5p

• Accession: MIMAT0053456
• Description: Drosophila sechellia dse-miR-278-5p mature miRNA
• Sequence: 18 - CCGGAUGAUGGUUCACAACGACC - 40
• Evidence: not_experimental

Mature dse-miR-278-3p

• Accession: MIMAT0008781
• Description: Drosophila sechellia dse-miR-278-3p mature miRNA
• Sequence: 57 - UCGGUGGGACUUUCGUCCGUUU - 78
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218