miRBase entry: dse-mir-34

Stem-loop dse-mir-34

Accession

MI0009349

Description

Drosophila sechellia dse-mir-34 precursor miRNA

Sequence

uggcuaugcgcuuUGGCAGUGUGGUUAGCUGGUUGuguagccaauuauugccguugacaauucacagccacuaucuucacugccgccgcgacaagc
..(((.(((((..((((((((.((.(((.((((((((..(.((((.......)))).)....))))))))))).)).))))))))..))).)))))

Structure

ug   a  -   uu        U  U   C        --ua c    ua 
  gcu ug cgc  UGGCAGUG GG UAG UGGUUGug    g caau  u
  ||| || |||  |||||||| || ||| ||||||||    | ||||  u
  cga ac gcg  gccgucac uc auc accgacac    c guug  g
--   -  a   cc        u  u   -        uuaa a    cc

Annotation confidence Not enough data

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Genome context

scaffold_0: 15986848-15986943 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dse-mir-34

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-34

Accession	MIMAT0008787
Description	Drosophila sechellia dse-miR-34 mature miRNA
Sequence	14 - UGGCAGUGUGGUUAGCUGGUUG - 35
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218