Stem-loop dse-mir-11

Accession

MI0009350

Description

Drosophila sechellia dse-mir-11 precursor miRNA

Sequence

50214 reads, 15805.0 reads per million, 1 experiments

gcacuuguCAAGAACUUUCUCUGUGACCCGcguguacuuaaaagccgCAUCACAGUCUGAGUUCUUGCugagugc
(((((((.(((((((((...((((((...(((.((........))))).))))))...))))))))).)))))))

Structure

       u         UCU      CCC   u  acu 
gcacuug CAAGAACUU   CUGUGA   Gcg gu   u
||||||| |||||||||   ||||||   ||| ||    
cgugagu GUUCUUGAG   GACACU   Cgc cg   a
       C         UCU      --A   -  aaa 

Annotation confidence High

Genome context

scaffold_6: 4043868-4043942 [+]

Mature dse-miR-11-5p

• Accession: MIMAT0053460
• Description: Drosophila sechellia dse-miR-11-5p mature miRNA
• Sequence: 9 - CAAGAACUUUCUCUGUGACCCG - 30
• Evidence: not_experimental

Mature dse-miR-11-3p

• Accession: MIMAT0008788
• Description: Drosophila sechellia dse-miR-11-3p mature miRNA
• Sequence: 48 - CAUCACAGUCUGAGUUCUUGC - 68
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218