miRBase entry: dse-mir-317

Stem-loop dse-mir-317

Accession

MI0009351

Description

Drosophila sechellia dse-mir-317 precursor miRNA

Sequence

augcaacugccauugggauacacccugugcucgcuuugaaugaaaugcaagcaagUGAACACAGCUGGUGGUAUCCAGUggccguuuggcau
(((((((.(((((((((...(((((((((.((((((.(..((.....))..))))))).)))))..))))...))))))))).)))..))))

Structure

    --   u         aua    --     c      u aa  a 
augc  aac gccauuggg   cacc  cugug ucgcuu g  ug a
||||  ||| |||||||||   ||||  ||||| |||||| |  || a
uacg  uug cggUGACCU   GUGG  GACAC AGUgaa c  ac u
    gu   c         AUG    UC     A      - ga  g

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

scaffold_0: 15996588-15996679 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dse-mir-317

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-317

Accession	MIMAT0008789
Description	Drosophila sechellia dse-miR-317 mature miRNA
Sequence	56 - UGAACACAGCUGGUGGUAUCCAGU - 79
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218