Stem-loop dse-mir-277

Accession

MI0009356

Description

Drosophila sechellia dse-mir-277 precursor miRNA

Sequence

9228 reads, 2905.0 reads per million, 1 experiments

uugaagguuuugggcugCGUGUCAGGAGUGCAUUUGCAcugaaacuaucugaagcaugUAAAUGCACUAUCUGGUACGACAuuccagaacguacaauc
(((.(.((((((((.(((((((((((((((((((((((.((...(.....)...)))))))))))))).))))))))).)).)))))))).).)))..

Structure

--   a g        c  -         -            c  aaa u 
  uug a guuuuggg ug CGUGUCAGG AGUGCAUUUGCA ug   c a
  ||| | |||||||| || ||||||||| |||||||||||| ||   | u
  aac u caagaccu AC GCAUGGUCU UCACGUAAAUgu ac   g c
cu   a g        u  A         A            -  gaa u 

Annotation confidence High

Genome context

scaffold_0: 15987794-15987891 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from dse-mir-277

Mature dse-miR-277-5p

• Accession: MIMAT0053462
• Description: Drosophila sechellia dse-miR-277-5p mature miRNA
• Sequence: 18 - CGUGUCAGGAGUGCAUUUGCA - 38
• Evidence: not_experimental

Mature dse-miR-277-3p

• Accession: MIMAT0008794
• Description: Drosophila sechellia dse-miR-277-3p mature miRNA
• Sequence: 59 - UAAAUGCACUAUCUGGUACGACA - 81
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218