miRBase entry: dse-mir-304

Stem-loop dse-mir-304


Accession
MI0009363
Description
Drosophila sechellia dse-mir-304 precursor miRNA


Sequence

848 reads, 267.0 reads per million, 1 experiments
gcagcauugaaUAAUCUCAAUUUGUAAAUGUGAGcgguuugagccauuugacgcacUCACUUUGCAAUUGGAGAUUGcucgagacugc
((((..((((.(((((((...(((((((.(((((.((((.((....)).))).).))))))))))))...))))))).))))..))))

Structure
    ca    a       AAU       U     c -   u  g 
gcag  uuga UAAUCUC   UUGUAAA GUGAG g guu ga c
||||  |||| |||||||   ||||||| ||||| | ||| ||  
cguc  agcu GUUAGAG   AACGUUU CACUc c cag uu c
    ag    c       GUU       -     a g   u  a 


Annotation confidence High
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Genome context
scaffold_73: 137414-137501 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from dse-mir-304
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dse-miR-304-5p

Accession MIMAT0008801
Description Drosophila sechellia dse-miR-304-5p mature miRNA
Sequence 12 - UAAUCUCAAUUUGUAAAUGUGAG - 34
Evidence not_experimental

Mature dse-miR-304-3p

Accession MIMAT0053465
Description Drosophila sechellia dse-miR-304-3p mature miRNA
Sequence 57 - UCACUUUGCAAUUGGAGAUUG - 77
Evidence not_experimental

References

  1. PubMed ID: 17994087
    Evolution of genes and genomes on the Drosophila phylogeny
    "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
    "Nature (2007) 450:203-218