miRBase entry: dse-mir-281-1

Stem-loop dse-mir-281-1

Accession

MI0009365

Description

Drosophila sechellia dse-mir-281-1 precursor miRNA

Sequence

cgaauaagugaauaAAGAGAGCUGUCCGUCGACAGUccagaaaccauuuaauaucacUGUCAUGGAAUUGCUCUCUUUGUauaauauucg
((((((.....(((((((((((..(((((.((((((...................)))))))))))...)))))))))))....))))))

Structure

      aguga           -UG     C      ccagaaac 
cgaaua     auaAAGAGAGC   UCCGU GACAGU        c
||||||     |||||||||||   ||||| ||||||        a
gcuuau     UGUUUCUCUCG   AGGUA CUGUca        u
      -aaua           UUA     -      cuauaauu

Annotation confidence Not enough data

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Genome context

scaffold_1: 5602980-5603069 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dse-mir-281-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature dse-miR-281-3p

Accession	MIMAT0008783
Description	Drosophila sechellia dse-miR-281-3p mature miRNA
Sequence	58 - UGUCAUGGAAUUGCUCUCUUUGU - 80
Evidence	not_experimental

Mature dse-miR-281-1-5p

Accession	MIMAT0008782
Description	Drosophila sechellia dse-miR-281-1-5p mature miRNA
Sequence	15 - AAGAGAGCUGUCCGUCGACAGU - 36
Evidence	not_experimental

References

PubMed ID: 17994087
Evolution of genes and genomes on the Drosophila phylogeny
"Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
"Nature (2007) 450:203-218