Stem-loop dse-mir-281-1

Accession

MI0009365

Description

Drosophila sechellia dse-mir-281-1 precursor miRNA

Sequence

1261 reads, 397.0 reads per million, 1 experiments

cgaauaagugaauAAAGAGAGCUGUCCGUCGACAguccagaaaccauuuaauaucaCUGUCAUGGAAUUGCUCUCUUUGUauaauauucg
((((((.....(((((((((((..(((((.((((((...................)))))))))))...)))))))))))....))))))

Structure

      aguga           -UG     C      ccagaaac 
cgaaua     auAAAGAGAGC   UCCGU GACAgu        c
||||||     |||||||||||   ||||| ||||||        a
gcuuau     UGUUUCUCUCG   AGGUA CUGUCa        u
      -aaua           UUA     -      cuauaauu 

Annotation confidence High

Genome context

scaffold_1: 5602980-5603069 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dse-mir-281-1

Mature dse-miR-281-1-5p

• Accession: MIMAT0008782
• Description: Drosophila sechellia dse-miR-281-1-5p mature miRNA
• Sequence: 14 - AAAGAGAGCUGUCCGUCGACA - 34
• Evidence: not_experimental

Mature dse-miR-281-3p

• Accession: MIMAT0008783
• Description: Drosophila sechellia dse-miR-281-3p mature miRNA
• Sequence: 57 - CUGUCAUGGAAUUGCUCUCUUUGU - 80
• Evidence: not_experimental

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218